Conference Papers (Peer Reviewed)

47. Y. O. He, L. Barisoni, A. Z. Rosenberg, P. Robinson, A. D. Diehl, Y. Chen, J. Phuong, J. Hensen, B. W. Herr II, K. Borner, J. Schaub, N. Bonevich, G. Arnous, S. Boddapati, J. Zheng, F. Alakwaa, P. Sarder, W. D. Duncan, C. Liang, M. T. Valerius, S. Jain, R. Iyengar, J. Himmelfarb, M. Kretzler, and Kidney Precision Medicine Project, “Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine,” Proc. of American Medical Informatics Association (AMIA) 2024 Annual Symposium, vol. XX, pp. XX: 1-10, San Francisco, CA, Nov. 2024.

46. S. Mimar, A. S. Paul, N. Lucarelli, S. P. Border, A. Naglah§, L. Barisoni, J. Hodgin, A. Z. Rosenberg, W. Clapp, and P. Sarder, “ComPRePS: An automated cloud-based image analysis tool to democratize AI in digital pathology,” SPIE–Medical Imaging 2024: Digital & Computational Pathology, vol. 12933, pp. 129330Z:1–7, San Diego, CA, Feb. 21, 2024.

45. N. Lucarelli, Z. Laszik, S. Winfree, T. M. El-Achkar, M. T. Eadon, S. Jain, and P. Sarder, “Computational integration of CODEX and brightfield histology for cell annotation using deep learning,” SPIE–Medical Imaging 2024: Digital & Computational Pathology, vol. 12933, pp. 129331F:1–4, San Diego, CA, Feb. 21, 2024.

44. A. Naglah§, A. S. Paul, R. M. Ferreira, A. Z. Rosenberg, S. S. Han, J. Ray, M. T. Eadon, and P. Sarder, “Correlation of glomerular histomorphometry changes with spatially resolved transcriptomic profiles in diabetic nephropathy,” SPIE–Medical Imaging 2024: Digital & Computational Pathology, vol. 12933, pp. 129331G:1–5, San Diego, CA, Feb. 21, 2024.

43. J. Maragall, N. Lucarelli, S. P. Border, M. J. Tan, S. Winfree, Z. Laszik, M. Eadon, T. M. El-Achkar, S. Jain, and P. Sarder, “CODEX and H&E Imaging: Cell Type Mapping, Analysis, and Visualization Pipeline,” SPIE–Medical Imaging 2024: Digital & Computational Pathology, vol. 12933, pp. 129330W:1–10, San Diego, CA, Feb. 21, 2024.

42. W. Ju, S. P. Border, A. Mitra, E. Okon, H. Jeong, R. M. Levenson, A. Z. Rosenberg, K. Y. Jen, P. Sarder, and F. Fereidouni, “Utilizing DUET imaging for quantification of collagen and elastin as biomarkers for studying disease,” Proc. SPIE BiOS–Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications XV, vol. 12862, pp. 1286206: 1-6, San Francisco, CA, Jan. 2024.

41. M. J. Tan, A. B. Satriya, S. L. Kee, M. A. Go Sy, and P. Sarder, “The triple aim of a semester-long course in science, technology, and society,” Proc. 2023 IEEE International Conference on Teaching, Assessment and Learning for Engineering (TALE), pp. 1-7, Auckland, New Zealand, Nov. 2023.

40. S. L. Kee, M. A. Sy, S. P. Border, N. Lucarelli, A. Gupta, P. Sarder, M. Masalunga, and M. J. Tan, “Predicting papillary renal cell carcinoma prognosis using integrative analysis of histopathological images and genomic data,” 10th International Work-Conference on Bioinformatics and Biomedical Engineering, vol. 13920, pp: 1-14, Gran Canaria, Spain, Jul. 2023.

39. B. Ginley§, N. Lucarelli, J. Zee, S. Jain, S. S. Han, L. Rodrigues, M. L. Wong, K. Y. Jen, and P. Sarder, “Automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine,” Proc. of SPIE–Medical Imaging 2023: Digital & Computational Pathology, vol. 12471, pp. 1247166:1–5, San Diego, CA, Apr. 2023.

38. B. Lutnick, N. Lucarelli, and P. Sarder, “Generative modeling of histology tissue reduces human annotation effort for segmentation model development,” Proc. of SPIE–Medical Imaging 2023: Digital & Computational Pathology, vol. 12471, pp. 1247165:1–5, San Diego, CA, Feb. 2023.

37. B. Shickel, N. Lucarelli, A. Rao, D. Yun, K. C. Moon, S. S. Han, and P. Sarder, “Spatially aware transformer networks for contextual prediction of diabetic nephropathy progression from whole slide images,” Proc. of SPIE–Medical Imaging 2023: Digital & Computational Pathology, vol. 12471, pp. 1247119:1–12, San Diego, CA, Feb. 2023.

36. S. P. Border, A. Rosenberg, J. Zee, R. Levenson, K. Y. Jen, P. Sarder, and F. Fereidouni, “Improving quantification of renal fibrosis using deep-DUET,” Proc. of SPIE–Medical Imaging 2023: Digital & Computational Pathology, vol. 12471, pp. 1247115:1–5, San Diego, CA, Feb. 2023.

35. B. Lutnick, D. Manthey, J. U. Becker, J. E. Zuckerman, L. Rodrigues, K. Y. Jen, and P. Sarder, “A cloud-based tool for federated segmentation of whole slide images,” Proc. of SPIE–Medical Imaging 2022: Digital & Computational Pathology, vol. 12039, pp. 1203951:1–7, San Diego, CA, USA, Feb. 2022.

34. N. Kavthekar, B. Ginley§, S. P. Border, N. Lucarelli, K. Y. Jen, and P. Sarder, “Automated tubular morphometric visualization for whole kidney biopsy,” Proc. of SPIE–Medical Imaging 2022: Digital & Computational Pathology, vol. 12039, pp. 1203948:1–7, San Diego, CA, USA, Feb. 2022.

33. N. Lucarelli, D. Yun, D. Han, B. Ginley§, K. C. Moon, A. Rosenberg, J. E. Tomaszewski, S. S. Han, and P. Sarder, “Computational integration of renal histology and urinary proteomics using deep learning regression,” Proc. of SPIE–Medical Imaging 2022: Digital & Computational Pathology, vol. 12039, pp. 1203931:1–9, San Diego, CA, USA, Feb. 2022.

32. S. P. Border, B. Ginley, J. E. Tomaszewski, and P. Sarder, “HistoLens: a generalizable tool for increasing accessibility and interpretability of quantitative analyses in digital pathology,” Proc. of SPIE–Medical Imaging 2022: Digital & Computational Pathology, vol. 12039, pp. 1203929:1–8, San Diego, CA, USA, Feb. 2022.

31. D. Govind, S. Meamardoost, R. Yacoub, R. Gunawan, J. E. Tomaszewski, and P. Sarder, “Integrating image analysis with single cell RNA-seq data to study podocyte-specific changes in diabetic kidney disease,” Proc. of SPIE–Medical Imaging 2022: Digital & Computational Pathology, vol. 12039, pp. 1203927:X–X, San Diego, CA, USA, Feb. 2022.

30. K. Y. Jen*, L. K. Murali†,*, B. Lutnick, B. Ginley, D. Govind, H. Mori, G. Gao, and P. Sarder, “In silico multi-compartment detection based on multiplex immunohistochemical staining in renal pathology,” Proc. of SPIE–Medical Imaging 2021: Digital & Computational Pathology, vol. 11603, pp. 1160337:1–8, San Diego, CA, USA, Feb. 2021.

29. A. K. Shashiprakash, B. Lutnick, B. Ginley, D. Govind, N. Lucarelli, K. Y. Jen, A. Z. Rosenberg, A. Urisman, V. Walavalkar, J. E. Zuckerman, M. Delsante, M. L. Z. Bissonnette, J. E. Tomaszewski, D. Manthey, and P. Sarder, “A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy,” Proc. of SPIE–Medical Imaging 2021: Digital & Computational Pathology, vol. 11603, pp. 1160328:1–6, San Diego, CA, USA, Feb. 2021.

28. B. Lutnick, A. K. Shashiprakash, D. Manthey, and P. Sarder, “User friendly, cloud based, whole slide image segmentation,” Proc. of SPIE–Medical Imaging 2021: Digital & Computational Pathology, vol. 11603, pp. 1160316:1–6, San Diego, CA, USA, Feb. 2021.

27. D. Govind, B. A. Santo, B. Ginley, R. Yacoub, A. Z. Rosenberg, K. Y. Jen, V. Walavalkar, G. E. Wilding, A. M. Worral, I. Mohammad, and P. Sarder, “Automated detection and quantification of Wilms’ Tumor 1-positive cells in murine diabetic kidney disease,” Proc. of SPIE–Medical Imaging 2021: Digital & Computational Pathology, vol. 11603, pp. 1160312:1–7, San Diego, CA, USA, Feb. 2021.

26. D. Govind, K. Y. Jen, and P. Sarder, “Deep learning-based automated hot-spot detection and tumor grading in human gastrointestinal neuroendocrine tumor,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132009:1–7, Houston, TX, USA, Feb. 2020.

25. L. K. Murali, B. Lutnick, B. Ginley, J. E. Tomaszewski, and P. Sarder, “Generative modeling for renal microanatomy,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132040:1–10, Houston, TX, USA, Feb. 2020.

24. K. E. Maraszek, B. A. Santo, R. Yacoub, J. E. Tomaszewski, I. Mohammad, A. M. Worral, and P. Sarder, “The presence and location of podocytes in glomeruli as affected by diabetes mellitus,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132012:1–10, Houston, TX, USA, Feb. 2020.

23. S. P. Border, K. Y. Jen, W. L. C. dos-Santos, J. E. Tomaszewski, and P. Sarder, “Probabilistic modelling of diabetic nephropathy progression,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132018:1–10, Houston, TX, USA, Feb. 2020.

22. B. A. Santo, B. H. Segal, J. E. Tomaszewski, I. Mohammad, A. M. Worral, S. Jain, M. Visser, and P. Sarder, “Neutrophil Extracellular Traps (NETs): an unexplored territory in renal pathobiology, a pilot computational study,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132022:1–7, Houston, TX, USA, Feb. 2020.

21. B. Ginley, K. Y. Jen, A. Rosenberg, G. M. Rossi, S. Jain, and P. Sarder, “Fully automated classification of glomerular lesions in lupus nephritis,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132005:1–7, Houston, TX, USA, Feb. 2020.

20. B. Lutnick, B. Ginley, K. Y. Jen, W. Dong, and P. Sarder, “Generative modeling for label-free glomerular modeling and classification,” Proc. of SPIE–Medical Imaging 2020: Digital Pathology, vol. 11320, pp. 1132008:1–6, Houston, TX, USA, Feb. 2020.

19. S. Dhiman, I. Singh, and P. Sarder, “Computational analysis of cerebrovascular structures imaged using two-photon microscopy,” Proc. of SPIE–Medical Imaging 2019: Digital Pathology, vol. 10956, pp. 1095617:1–6, San Diego, CA, USA, Feb. 2019.

18. A. Majumdar, K. Y. Jen, S. Jain, J. E. Tomaszewski, and P. Sarder, “Examining structural patterns and causality in diabetic nephropathy using inter-glomerular distance and Bayesian graphical models,” Proc. of SPIE–Medical Imaging 2019: Digital Pathology, vol. 10956, pp. 1095608:1–6, San Diego, CA, USA, Feb. 2019.

17. D. Govind, B. Ginley, B. Lutnick, J. E. Tomaszewski, and P. Sarder, “Glomerular detection and segmentation from multimodal microscopy images using a Butterworth band-pass filter,” Proc. of SPIE–Medical Imaging 2018: Digital Pathology, vol. 10581, pp. 10158114:1–7, Houston, TX, USA, Feb. 2018.

16. B. Lutnick, R. Yacoub, K. Y. Jen, J. E. Tomaszewski, S. Jain, and P. Sarder, “Deep variational auto-encoders for unsupervised glomerular classification,” Proc. of SPIE–Medical Imaging 2018: Digital Pathology, vol. 10581, pp. 1015810C:1–7, Houston, TX, USA, Feb. 2018.

15. O. Simon, R. Yacoub, S. Jain, J. E. Tomaszewski, and P. Sarder, “Examining structural changes in diabetic nephropathy using inter-nuclear distances in glomeruli: A comparison of variously automated methods,” Proc. of SPIE–Medical Imaging 2018: Digital Pathology, vol. 10581, pp. 1015810B:1–10, Houston, TX, USA, Feb. 2018.

14. B. Ginley, J. E. Tomaszewski, K. Y. Jen, A. Fogo, S. Jain, and P. Sarder, “Computational analysis of the structural progression of human diabetic nephropathy glomeruli,” Proc. of SPIE–Medical Imaging 2018: Digital Pathology, vol. 10581, pp. 1015810A:1–7, Houston, TX, USA, Feb. 2018.

13. K. Black, M. Zhou, P. Sarder, M. Kuchuk, A. Al-Yasiri, S. Gunsten, K. Liang, H. Hennkens, W. Akers, R. Laforest, S. Brody, C. Cutler, and S. Achilefu, “Dual-radiolabeled nanoparticle probes for depth-independent in vivo imaging of enzyme activation,” Proc. of SPIE–Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications, vol. 10508, pp. 1050805:1–5, San Francisco, CA, USA, Jan. 2018.

12. B. Lutnick, J. E. Tomaszewski, and P. Sarder, “Leveraging unsupervised training sets for multi-scale compartmentalization in renal pathology,” Proc. of SPIE–Medical Imaging 2017: Digital Pathology, vol. 10140, pp. 101400I:1–7, Orlando, FL, USA, Feb. 2017.

11. B. Ginley, J. E. Tomaszewski, and P. Sarder, “Automatic computational labeling of glomerular textural boundaries,” Proc. of SPIE–Medical Imaging 2017: Digital Pathology, vol. 10140, pp. 101400G:1–7, Orlando, FL, USA, Feb. 2017.

10. B. Ginley, T. Emmons, P. Sasankan, C. Urban, B. H. Segal, and P. Sarder, “Identification and characterization of neutrophil extracellular trap shapes in flow cytometry,” Proc. of SPIE–Medical Imaging 2017: Digital Pathology, vol. 10140, pp. 101400D:1–7, Orlando, FL, USA, Feb. 2017.

9. P. Sarder, B. Ginley, and J. E. Tomaszewski, “Automated renal histopathology: Digital extraction and quantification of renal pathology,” Proc. of SPIE–Medical Imaging 2016: Digital Pathology, vol. 9791, pp. 97910F:1–12, San Diego, CA, USA, Mar. 2016.

8. D. Hu*, P. Sarder*, P. Ronhovde, S. Achilefu, and Z. Nussinov, “Community detection for fluorescent lifetime microscopy image segmentation,” Proc. of SPIE–Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXI, vol. 8949, pp. 89491K:1–13, San Francisco, CA, USA, Feb. 2014.

7. D. Maji, M. Zhou, P. Sarder, and S. Achilefu, “Near-infrared fluorescence quenching properties of copper (II) ions for potential applications in biological imaging,” Proc. of SPIE–Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications, vol. 8956, pp. 89560K:1–6, San Francisco, CA, USA, Feb. 2014.

6. P. Sarder, W. Akers, G. Sudlow, S. Yazdanfar, and S. Achilefu “Quantitative determination of maximal imaging depth in all-NIR multiphoton microscopy images of thick tissues,” Proc. of SPIE–Multiphoton Microscopy in the Biomedical Sciences XIV, vol. 8948, pp. 894827:1–7, San Francisco, CA, USA, Feb. 2014.

5. X. Xu, Z. Li, N. Kotagiri, P. Sarder, S. Achilefu, and A. Nehorai, “Microfluidic microsphere-trap arrays for simultaneous detection of multiple targets,” Proc. of SPIE–Microfluidics, BioMEMS, and Medical Microsystems XI, vol. 8615, pp. 86151E:1–11, San Francisco, CA, USA, Feb. 2013.

4. X. Xu*, P. Sarder*, Z. Li*, and A. Nehorai, “Optimization of microfluidic trap-based microsphere arrays,” Proc. of SPIE–Microfluidics, BioMEMS, and Medical Microsystems XI, vol. 8615, pp. 86150V:1–12, San Francisco, CA, USA, Feb. 2013.

3. X. Xu, P. Sarder, and A. Nehorai, “Statistical design of position-encoded microsphere arrays at low target concentrations,” 45th Asilomar Conf. on Signals, Systems, and Computers, pp. 1694–1698, Pacific Grove, CA, USA, Nov. 2011.

2. P. Sarder, and A. Nehorai, “Statistical design of a 3D microarray with position-encoded microspheres,” Proc. Third International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), pp. 161–164, Aruba, Dutch Antilles, Dec. 2009.

1. P. Sarder, and A. Nehorai, “Performance analysis of quantifying fluorescence of target-captured microparticles from microscopy images,” Proc. Fourth IEEE Workshop on Sensor Array and Multi-Channel Processing, pp. 289–293, Waltham, MA, USA, Jul. 2006.


Underline indicates corresponding author.
* indicates equal contribution.
indicates Dr. Sarder’s faculty trainees.
§ indicates post doctoral associates.
indicates Dr. Sarder’s graduate students.
indicates Dr. Sarder’s undergraduate students.