Skip to main content Skip to main menu
UF Health University of Florida
Computational Microscopy Imaging Laboratory Section of Quantitative Health in the Department of Medicine
join us
Software Overview

IFTASegmenter

This software conducts automated segmentation and quantification of interstitial fibrosis and tubular atrophy (IFTA) and glomerulosclerosis from renal tissue whole slide images.  All the codes, images and trained models used for evaluation are made available for the community.  A schematic overview is shown below.

Schematic overview of IFTA segmentation using the H-AI-L pipeline. 
Schematic overview of IFTA segmentation using the H-AI-L pipeline. 

Resources

  • Running IFTASegmenter

Select References

B. Ginley, K. Y. Jen, S. S. Han, L. Rodrigues, S. Jain, A. Fogo, J. Zuckerman, V. Walavalkar, J. C. Miecznikowski, Y. Wen, F. Wen, D. Yun, K. C. Moon, A. Rosenberg, C. Parikh, and P. Sarder, “Automated computational detection of interstitial fibrosis, tubular atrophy, and glomerulosclerosis,” Journal of the American Society of Nephrology, vol. 32, no. 4, pp. 837-50, Apr. 2021.

Underline indicates corresponding author.
* indicates equal contribution.
§ indicates post doctoral associates.
† indicates Dr. Sarder’s graduate students.
‡ indicates Dr. Sarder’s undergraduate Students.