Tubulopia

Tubulopia is a web-based computational pathology platform for automated segmentation of the tubular basement membrane (TBM) in periodic acid–Schiff (PAS)-stained kidney whole-slide images (WSIs). The platform uses a topology-aware deep learning model to identify morphologically complex TBM structures and provides an accessible interface for reviewing segmentation results. 

The application enables researchers and pathologists to: 

  • Upload PAS-stained kidney WSIs for automated TBM segmentation. 
  • Submit segmentation jobs and monitor their processing status. 
  • Visualize predicted TBM masks as overlays on the original WSIs. 
  • Interactively inspect and refine AI-generated TBM segmentation results. 
  • Export segmentation and analysis results for downstream research and pathological assessment. 
A page from "Tubulopia" website showing kidney and annotations overlaid on top of it.


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