Lecture Videos & Teaching Materials

Survival Analysis Lecture Videos by Dr. Jarcy Zee, University of Pennsylvania, Online, May-June, 2026

Lecture 1 on Intro to survival analysis

Lecture 2 on Cox proportional hazard

Lecture 3 on Cox proportional hazard (continued)

PowerPoint slide

SPIE Medical Imaging – Digital & Computational Pathology, Vancouver, BC, Canada, Feb 15-20, 2026

Platform talk by Nicholas Lucarelli on Fusion Annotator: a platform for accelerating consensus‑driven ground truth generation with AI assistance

Platform talk by Nicholas Lucarelli on a deep learning‑based cell type prediction in lung tissue from brightfield histology using CODEX-derived labels

Poster presentation by Lylybell Zhou on a pathomics‑integrated approach toward improved prediction of kidney survivability up to five years post‑biopsy in IgA nephropathy patients

Poster presentation by Connie Gao on a pathomic‑ensemble strategy for exploring histological signatures of eGFR decline in IgAN

Kidney Biopsy Evaluation for FSGS, Online, June 23, 2025

Talk by Dr. Luís Rodriguez on FSGS classification

Kidney Biopsy Evaluation for IgAN, Online, June 9, 2025

Talk by Dr. Luís Rodriguez on IgAN classification

FUSION Demonstration, Online, May 29, 2025

Talk by Sam Border on FUSION

SPIE Medical Imaging – Digital & Computational Pathology, San Diego, CA, Feb 16-20, 2025

Platform talk by Fatemeh Afsari on a machine learning approach for analyzing texture and morphometry markers of glioblastoma TERT promoter mutations in DAPI fluorescence images

Platform talk by Sayat Mimar on cell type prediction for intestine tissue samples from brightfield histology via deep learning

Platform talk by Jamie L. Fermin on renal cell type and state estimation in brightfield histology images: a pilot study on diabetic nephropathy

Platform talk by Akshita Gupta on enhancing predictive accuracy of allograft outcomes: beyond traditional clinical and biopsy scoring methods

Platform talk by Harishwar Reddy Kasireddy on explainable feature embeddings from histopathology foundation models: a case study for end stage kidney disease risk analysis in diabetic nephropathy patients

Platform talk by Ishaq Ansari on AI-based pipeline for automatic quantification of tissue ingrowth in histopathology images of cerebral aneurysm

Poster presentation by Suhas Katari Chaluva Kumar on ComPRePS 2.0: enabling massive-scale distributed computing on high-performance computing cluster for histopathological data processing

Seminar in Nephropathology, the Glomerular Disease Study & Trial Consortium (GlomCon), Online, May 12, 2024

Talk by Dr. Pinaki Sarder and Sam Border on Fusion

SPIE Medical Imaging – SPIE Medical Imaging – Digital & Computational Pathology, San Diego, CA, Feb 18-23, 2024

Platform talk by Nicholas Lucarelli on CODEX and H&E imaging: cell type mapping, analysis, and visualization pipeline

Platform talk by Sayat Mimar on ComPRePS: an automated cloud-based image analysis tool to democratize AI in digital pathology

Platform talk by Nicholas Lucarelli on computational integration of CODEX and brightfield histology for cell annotation using deep learning

Platform talk by Ahmed Naglah on correlation of glomerular histomorphometry changes with spatially resolved transcriptomic profiles in diabetic nephropathy

Diabetes Institute, University of Florida, Nov 8, 2023

Talk by Dr. Pinaki Sarder on segmentation of kidney structures

Lectures on Transplant and Banff Scoring by Dr. Kuang, UC Davis, Online, Oct 16-30, 2023

Lecture 1 recorded on October 15, 2023.

Lecture 2 recorded on October 27, 2023.

Lecture 3 recorded on October 30, 2023.

Medicine Grand Rounds, University of Florida, Online, Aug 10, 2023

Talk by Dr. Pinaki Sarder on AI in Nephropathology

Banff Digital Pathology Working Group (DPWG) Meeting, Online, May 25, 2023

Talk by Dr. Ahmed Naglah on the role of generative AI in the field of digital pathology and computational pathology

SPIE Medical Imaging – SPIE Medical Imaging – Digital & Computational Pathology, San Diego, CA, Apr 7, 2023

Platform talk by Samuel Border on improving quantification of renal fibrosis using deep-DUET

Platform talk by Benjamin Shickel on spatially aware transformer networks for contextual prediction of diabetic nephropathy progression from whole slide images

Platform talk by Nicholas Lucarelli generative modeling of histology tissue reduces human annotation effort for segmentation model development

Platform talk by Nicholas Lucarelli on automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada, Online, Jan 1, 2023

Seminar by Dr. Sarder

29th International Congress of the Transplantation Society, Buenos Aires, Argentina, Sep 13, 2022

Talk by Dr. Sarder

SPIE Medical Imaging – SPIE Medical Imaging – Digital & Computational Pathology, Online, Feb 21, 2022

Platform talk by Samuel Border on increasing accessibility and interpretability of quantitative analyses in digital pathology

Platform talk by Darshana Govind on Integrating image analysis with single-cell RNA-seq data to study podocyte-specific changes in diabetic kidney disease

Poster presentation by Neil Kavthekar on automated tubular morphometry visualization for whole kidney biopsy

Platform talk by Nick Lucarelli on computational integration of renal histology and urinary proteomics using neural network

ASN Kidney Week 2021, Online, Nov 5, 2021

Platform presentation by Brendon Lutnick on our Kidney Precision Medicine Project

XXXV Portuguese Nephrology Congress & XIII Luso-Brazilian Nephrology Congress, Vilamoura Congress Center, Portugal, Oct 15, 2021

Talk by Dr. Sarder

ISMRM Workshop on Kidney MRI Biomarkers: The Route to Clinical Adoption, Philadelphia, PA, Sep 10, 2021

Talk by Nicholas Lucarelli

29th Conference on ISMB and 20th ECCB, Online, Jul 28, 2021

Talk by Dr. Sarder

Brigham and Women’s Hospital Computational Pathology Symposium, Harvard Medical School, Boston, MA, Apr 20, 2021

Talk by Dr. Sarder

USCAP 2021, Online, Mar 13-18

Poster presentation by Nicholas Lucarelli on digital biopsy image and urinary proteomics data fusion

AI in Nephropathology Workshop, Amsterdam 2021

Workshop video: Part 2

Workshop video: Part 1

SPIE Medical Imaging – Digital & Computational Pathology, Online, Feb 15, 2021

Poster presentation by Kuang-Yu Jen on multi-compartment segmentation in renal transplant pathology

Poster presentation by Brendon Lutnick on distributed segmentation of digital pathology whole slide images

Platform talk by Brendon Lutnick on cloud based digital pathology whole slide image segmentation

Platform talk by Darshana Govind on automated podocyte detection and quantification

Custom Convolutional Neural Network for Image Classification, Lecture by Brendon Lutnick, Jan 22, 2020

Lecture video

Python code with documentation

Computational Nephropathology: From Basics to Applications: Applications of Computational Pathology to Nephropathology Research – Part 2, Jan 27, 2020

Computational Nephropathology: From Basics to Applications: Applications of Computational Pathology to Nephropathology Research – Part 1, Nov 26, 2019